dynwrap :: Creating a trajectory

Methods to create a trajectory

add_branch_trajectory

Create a trajectory given its branch network and the pseudotime of the cells on one of the branches

add_cell_graph

Constructs a trajectory using a graph between cells, by mapping cells onto a set of backbone cells.

add_cluster_graph

Constructs a trajectory using a cell grouping and a network between groups. Will use an existing grouping if it is present in the dataset.

add_cyclic_trajectory

Constructs a circular trajectory using the pseudotime values of each cell.

add_dimred_projection

Constructs a trajectory by projecting cells within a dimensionality reduction onto a backbone formed by a milestone network. Optionally, a cell grouping can be given which will restrict the edges on which a cell can be projected.

add_end_state_probabilities

Multifurcating trajectory with end state probabilities

add_linear_trajectory

Constructs a linear trajectory using the pseudotime values of each cell.

add_trajectory is_wrapper_with_trajectory

Define a trajectory dataset given its milestone network and milestone percentages or progressions

wrap_data is_data_wrapper

A data wrapper for datasets and trajectories