Methods to create a trajectory
Create a trajectory given its branch network and the pseudotime of the cells on one of the branches |
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Constructs a trajectory using a graph between cells, by mapping cells onto a set of backbone cells. |
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Constructs a trajectory using a cell grouping and a network between groups. Will use an existing grouping if it is present in the dataset. |
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Constructs a circular trajectory using the pseudotime values of each cell. |
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Constructs a trajectory by projecting cells within a dimensionality reduction onto a backbone formed by a milestone network. Optionally, a cell grouping can be given which will restrict the edges on which a cell can be projected. |
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Multifurcating trajectory with end state probabilities |
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Constructs a linear trajectory using the pseudotime values of each cell. |
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Define a trajectory dataset given its milestone network and milestone percentages or progressions |
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A data wrapper for datasets and trajectories |