dynverse is a collection of R packages aimed at supporting the trajectory inference (TI) community on multiple levels: end-users who want to apply TI on their dataset of interest, and developers who seek to easily quantify the performance of their TI method and compare it to other TI methods.
Some of these packages were developed as part of a benchmarking study ➙
A comparison of single-cell trajectory inference methods
Helena Todorov, Yvan Saeys.
The dyno package offers end-users a complete TI pipeline. It features:
Post an issue on Github ➙ https://github.com/dynverse/dyno
For developers of existing or new TI methods, dyno offers the same features as to end-users. In addition, developers might also want to check out the following packages: