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  • Method users logo
    • Installation
    • Quick start
    • User guide
      • Preparing the data
      • Selecting the best methods for a dataset
      • Inferring trajectories
      • Visualising the trajectory
      • Adapting the trajectory
      • Trajectory differentially expression
  • Method developers logo
    • Creating a TI method
      • Creating a trajectory
      • Wrapping in R
      • Wrapper script
      • Containerised wrapping
    • Evaluating a TI method
  • Reference
    • dynwrap
      • Creating a trajectory
      • Adapting a trajectory model
      • Calculations from a trajectory
      • Creating a TI method
      • Running a TI method
      • Other
    • dynplot
      • Plot a trajectory
      • Visually comparing trajectories
      • Plotting helper functions
      • Other
    • dynmethods
      • Trajectory inference methods
      • Other
    • dyneval
      • Evaluating methods
      • Metrics for comparing trajectories
      • Other
  • About
    • Contributing
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