dynmethods

dynmethods 1.0.1

  • FIX: Update version numbers of methods due to workaround for hdf5r on windows.

dynmethods 1.0.0 (28-03-2019)

  • MAJOR CHANGE: Compatibility with dynwrap v1.0.0

  • MAJOR CHANGE: dynmethods package is now coupled to particular tags of dynmethods containers

  • MAJOR CHANGE: The format of the dynmethods::methods object has been changed.

  • MAJOR CHANGE: All methods now work with sparse matrices and dyncli

  • DOCUMENTATION: Improved method documentation

Trajectory inference methods

Trajectory inference methods

ti_angle

Angle

ti_calista

CALISTA

ti_cellrouter

CellRouter

ti_celltrails

CellTrails

ti_celltree_gibbs

cellTree Gibbs

ti_celltree_maptpx

cellTree maptpx

ti_celltree_vem

cellTree vem

ti_comp1

Component 1

ti_dpt

DPT

ti_elpicycle

ElPiGraph - Cycle

ti_elpigraph

ElPiGraph

ti_elpilinear

ElPiGraph - Linear

ti_embeddr

Embeddr

ti_error

Error

ti_fateid

FateID

ti_forks

FORKS

ti_gng

GNG

ti_gpfates

GPfates

ti_grandprix

GrandPrix

ti_identity

Identity

ti_matcher

MATCHER

ti_merlot

MERLoT

ti_mfa

MFA

ti_monocle_ddrtree

Monocle DDRTree

ti_monocle_ica

Monocle ICA

ti_mpath

Mpath

ti_mst

MST

ti_ouija

ouija

ti_ouijaflow

ouijaflow

ti_paga

PAGA

ti_paga_tree

PAGA Tree

ti_pcreode

pCreode

ti_periodpc

Periodic PrinCurve

ti_phenopath

PhenoPath

ti_projected_dpt

Projected DPT

ti_projected_monocle

Projected Monocle

ti_projected_paga

Projected PAGA

ti_projected_slingshot

Projected Slingshot

ti_projected_tscan

Projected TSCAN

ti_pseudogp

pseudogp

ti_raceid_stemid

RaceID / StemID

ti_random

Random

ti_recat

reCAT

ti_scimitar

SCIMITAR

ti_scorpius

SCORPIUS

ti_scoup

SCOUP

ti_scuba

SCUBA

ti_shuffle

shuffle

ti_sincell

Sincell

ti_slice

SLICE

ti_slicer

SLICER

ti_slingshot

Slingshot

ti_stemnet

STEMNET

ti_topslam

topslam

ti_tscan

TSCAN

ti_urd

URD

ti_wanderlust

Wanderlust

ti_waterfall

Waterfall

ti_wishbone

Wishbone

Other

dynmethods dynmethods-package

Wrappers for trajectory inference methods

methods

Metadata on the different TI methods