ti_matcher.RdWill generate a trajectory using MATCHER.
This method was wrapped inside a container. The original code of this method is available here.
ti_matcher(quantiles = 50L, method = "linear")
| quantiles | Quantiles How many quantiles to use when computing warp functions (integer). Domain: U(2, 500). Default: 50. Format: integer. |
|---|---|
| method | Gaussian process regression or linear interpolation? ("gp" or "linear). Domain: gp, linear. Default: linear. Format: character. |
A TI method wrapper to be used together with
infer_trajectory
Welch, J.D., Hartemink, A.J., Prins, J.F., 2017. MATCHER: manifold alignment reveals correspondence between single cell transcriptome and epigenome dynamics. Genome Biology 18.