ti_tscan.RdWill generate a trajectory using TSCAN.
This method was wrapped inside a container. The original code of this method is available here.
ti_tscan(minexpr_percent = 0L, minexpr_value = 0L, cvcutoff = 0L, clusternum = c(2L, 9L), modelNames = "VVV")
| minexpr_percent | . Domain: U(0, 1). Default: 0. Format: numeric. |
|---|---|
| minexpr_value | . Domain: U(0, 10). Default: 0. Format: numeric. |
| cvcutoff | . Domain: U(0, 5). Default: 0. Format: numeric. |
| clusternum | . Domain: ( U(2, 20), U(2, 20) ). Default: (2, 9). Format: integer_range. |
| modelNames | . Domain: EII, VII, EEI, VEI, EVI, VVI, EEE, EVE, VEE, VVE, EEV, VEV, EVV, VVV. Default: VVV. Format: character. |
A TI method wrapper to be used together with
infer_trajectory
Ji, Z., Ji, H., 2016. TSCAN: Pseudo-time reconstruction and evaluation in single-cell RNA-seq analysis. Nucleic Acids Research 44, e117–e117.