SLICER

Will generate a trajectory using SLICER.

This method was wrapped inside a container. The original code of this method is available here.

ti_slicer(kmin = 10L, m = 2L)

Arguments

kmin

Smallest value of k to try. Domain: U(2, 20). Default: 10. Format: integer.
m

Intrinsic dimension of the data. This parameter mainly influences the visualisation of the results. The real intrinsic dimension will be calculated automaticly. Domain: U(2, 20). Default: 2. Format: integer.

Value

A TI method wrapper to be used together with infer_trajectory

References

Welch, J.D., Hartemink, A.J., Prins, J.F., 2016. SLICER: inferring branched, nonlinear cellular trajectories from single cell RNA-seq data. Genome Biology 17.