ti_pcreode.RdWill generate a trajectory using pCreode.
This method was wrapped inside a container. The original code of this method is available here.
ti_pcreode(n_pca_components = 3L, num_runs = 10L)
| n_pca_components | . Domain: U(2, 10). Default: 3. Format: integer. |
|---|---|
| num_runs | . Domain: e^U(2.30, 4.61). Default: 10. Format: integer. |
A TI method wrapper to be used together with
infer_trajectory
Herring, C.A., Banerjee, A., McKinley, E.T., Simmons, A.J., Ping, J., Roland, J.T., Franklin, J.L., Liu, Q., Gerdes, M.J., Coffey, R.J., Lau, K.S., 2018. Unsupervised Trajectory Analysis of Single-Cell RNA-Seq and Imaging Data Reveals Alternative Tuft Cell Origins in the Gut. Cell Systems 6, 37–51.e9.