Label milestones either manually (<code>label_milestones</code>) or using marker genes (<code>label_milestones_markers</code>)

Source: R/wrap_label_milestones.R

Label milestones either manually (label_milestones) or using marker genes (label_milestones_markers)

label_milestones(trajectory, labelling)

label_milestones_markers(trajectory, markers,
  expression_source = "expression", n_nearest_cells = 20)

is_wrapper_with_milestone_labelling(trajectory)

get_milestone_labelling(trajectory, label_milestones = NULL)

Arguments

trajectory

The trajectory as created by infer_trajectory() or add_trajectory()
labelling

Named character vector containing for a milestone a new label
markers

List containing for each label a list of marker genes
expression_source

The expression source
n_nearest_cells

The number of nearest cells to use for extracting milestone expression
label_milestones

How to label the milestones. Can be TRUE (in which case the labels within the trajectory will be used), "all" (in which case both given labels and milestone_ids will be used), a named character vector, or FALSE