Plotting a trajectory model
plot_dendro
Plot a trajectory as a dendrogram
plot_dimred
Plot a trajectory on dimensionality reduction
plot_graph plot_default
plot_graph
plot_default
Plot a trajectory and cellular positions as a graph
plot_heatmap
Plot the expression across a trajectory in a heatmap
plot_onedim
Plot onedim
plot_topology
Plot the topology of a trajectory
Plots that help you compare two or more trajectories
plot_edge_flips
Plotting edge flips
plot_linearised_comparison
Plot strip onedim
plot_strip
Plot strip
Plotting helper functions
empty_plot
Create an empty plot for spacing
milestone_palette get_milestone_palette_names
milestone_palette
get_milestone_palette_names
Get the names of valid color palettes
process_dynplot
Default theme for TI plots
theme_clean
We like our plots clean
theme_graph
add_cell_coloring
Add coloring
add_density_coloring
Color cells using a background density
add_milestone_coloring
Add milestone coloring
dynplot dynplot-package
dynplot
dynplot-package
Plot all the trajectories
example_bifurcating
An example bifurcating dataset
example_disconnected
An example disconnected dataset
example_linear
An example linear dataset
example_tree
An example tree dataset
linearise_cells
Linearise a trajectory
project_waypoints
Project the waypoints
