TSCAN

Will generate a trajectory using TSCAN.

This method was wrapped inside a container. The original code of this method is available here.

ti_tscan(minexpr_percent = 0L, minexpr_value = 0L, cvcutoff = 0L,
  clusternum = c(2L, 9L), modelNames = "VVV")

Arguments

minexpr_percent

. Domain: U(0, 1). Default: 0. Format: numeric.

minexpr_value

. Domain: U(0, 10). Default: 0. Format: numeric.

cvcutoff

. Domain: U(0, 5). Default: 0. Format: numeric.

clusternum

. Domain: ( U(2, 20), U(2, 20) ). Default: (2, 9). Format: integer_range.

modelNames

. Domain: EII, VII, EEI, VEI, EVI, VVI, EEE, EVE, VEE, VVE, EEV, VEV, EVV, VVV. Default: VVV. Format: character.

Value

A TI method wrapper to be used together with infer_trajectory

References

Ji, Z., Ji, H., 2016. TSCAN: Pseudo-time reconstruction and evaluation in single-cell RNA-seq analysis. Nucleic Acids Research 44, e117–e117.