Method users
Installation
Quick start
User guide
Preparing the data
Selecting the best methods for a dataset
Inferring trajectories
Visualising the trajectory
Adapting the trajectory
Trajectory differentially expression
Example analyses
Method developers
Creating a TI method
Bare-bones
Wrapper script
Container
Evaluating a TI method
Reference
dynwrap
Creating a trajectory
Adapting a trajectory model
Calculations from a trajectory
Creating a TI method
Running a TI method
Other
dynplot
Plot a trajectory
Visually comparing trajectories
Plotting helper functions
Other
dynmethods
Trajectory inference methods
Other
dyneval
Evaluating methods
Metrics for comparing trajectories
Other
About
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Method users
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Example analyses