Will extract outputs from a given folder given an output format:
rds: One output.rds file containing all the output. Output can be present as .$pseudotime or as .$linear_trajectory$pseudotime . Parameters specific for an output should be given in .$linear_trajectory$params
text: Csv and/or json files, including subdirectories. Output can be present as ./pseudotime.csv or as ./linear_trajectory/pseudotime.csv. Parameters specific for an output should be given in ./linear_trajectory/params.json.
feather: Feather files
dynwrap: Directly a dynwrap wrapper as an rds file in output.rds
wrap_output(output_ids, dir_output, output_format = c("text", "rds", "feather", "dynwrap")) wrap_rds(output_ids, dir_output) wrap_text(output_ids, dir_output) wrap_feather(output_ids, dir_output)
| output_ids | The ids of the outputs generated by the methods |
|---|---|
| dir_output | The directory containing the output files |
| output_format | The output format, can be rds, text or dynwrap |