Will generate a trajectory using SLICER.
This method was wrapped inside a container. The original code of this method is available here.
ti_slicer(kmin = 10L, m = 2L, run_environment = NULL)
| kmin | integer; Smallest value of k to try (default: |
|---|---|
| m | integer; Intrinsic dimension of the data. This parameter mainly
influences the visualisation of the results. The real intrinsic dimension will
be calculated automaticly. (default: |
| run_environment | In which environment to run the method, can be |
A TI method wrapper to be used together with
infer_trajectory
Welch, J.D., Hartemink, A.J., Prins, J.F., 2016. SLICER: inferring branched, nonlinear cellular trajectories from single cell RNA-seq data. Genome Biology 17.