Inferring a trajectory inference using ouijaflow

Source: R/ti_ouijaflow.R

Will generate a trajectory using ouijaflow.

This method was wrapped inside a container. The original code of this method is available here.

ti_ouijaflow(iter = 1000L, run_environment = NULL)

Arguments

iter

integer; (default: 1000L; range: from 2L to 50000L)
run_environment

In which environment to run the method, can be "docker" or "singularity".

Value

A TI method wrapper to be used together with infer_trajectory

References

Campbell, K.R., Yau, C., 2016. A descriptive marker gene approach to single-cell pseudotime inference.