Will generate a trajectory using Monocle ICA.
This method was wrapped inside a container. The original code of this method is available here.
ti_monocle_ica(reduction_method = "ICA", max_components = 2L, norm_method = "vstExprs", run_environment = NULL)
| reduction_method | discrete; A character string specifying the algorithm
to use for dimensionality reduction. (default: |
|---|---|
| max_components | integer; The dimensionality of the reduced space
(default: |
| norm_method | discrete; Determines how to transform expression values
prior to reducing dimensionality (default: |
| run_environment | In which environment to run the method, can be |
A TI method wrapper to be used together with
infer_trajectory
Qiu, X., Mao, Q., Tang, Y., Wang, L., Chawla, R., Pliner, H.A., Trapnell, C., 2017. Reversed graph embedding resolves complex single-cell trajectories. Nature Methods 14, 979–982.