Will generate a trajectory using MATCHER.
This method was wrapped inside a container. The original code of this method is available here.
ti_matcher(quantiles = 50L, method = "linear", run_environment = NULL)
| quantiles | integer; Quantiles How many quantiles to use when computing
warp functions (integer) (default: |
|---|---|
| method | discrete; Gaussian process regression or linear interpolation?
("gp" or "linear) (default: |
| run_environment | In which environment to run the method, can be |
A TI method wrapper to be used together with
infer_trajectory
Welch, J.D., Hartemink, A.J., Prins, J.F., 2017. MATCHER: manifold alignment reveals correspondence between single cell transcriptome and epigenome dynamics. Genome Biology 18.