Will generate a trajectory using MATCHER.

This method was wrapped inside a container. The original code of this method is available here.

ti_matcher(quantiles = 50L, method = "linear",
  run_environment = NULL)

Arguments

quantiles

integer; Quantiles How many quantiles to use when computing warp functions (integer) (default: 50L; range: from 2L to 500L)

method

discrete; Gaussian process regression or linear interpolation? ("gp" or "linear) (default: "linear"; values: "gp", "linear")

run_environment

In which environment to run the method, can be "docker" or "singularity".

Value

A TI method wrapper to be used together with infer_trajectory

References

Welch, J.D., Hartemink, A.J., Prins, J.F., 2017. MATCHER: manifold alignment reveals correspondence between single cell transcriptome and epigenome dynamics. Genome Biology 18.