Plot a tree trajectory as a dendrogram

Source: R/plot_dendro.R

Plot a tree trajectory as a dendrogram

plot_dendro(traj, color_cells = c("auto", "none", "grouping", "feature",
  "milestone", "pseudotime"), grouping = NULL, groups = NULL,
  feature_oi = NULL, expression_source = "expression",
  pseudotime = NULL, color_milestones = c("auto", "given", "cubeHelix",
  "Set3", "rainbow"), milestones = NULL, milestone_percentages = NULL,
  diag_offset = 0.05)

Arguments

traj

The trajectory
color_cells

How to color the cells
grouping

The grouping of the cells
groups

Tibble containing information of the cell groups
feature_oi

feature to plot expression
expression_source

Source of the feature expression, defaults to `expression`
pseudotime

The pseudotime
color_milestones

How to color the cells
milestones

Tibble containing the `milestone_id` and a `color` for each milestone
milestone_percentages

The milestone percentages
diag_offset

The x-offset (percentage of the edge lenghts) between milestones