Calculate geodesic distances between cells in a trajectory, taking into account tents

Calculate geodesic distances between cells in a trajectory, taking into account tents

compute_tented_geodesic_distances(trajectory, waypoint_cells = NULL,
  waypoint_milestone_percentages = NULL)

compute_tented_geodesic_distances_(cell_ids, milestone_ids,
  milestone_network, milestone_percentages, divergence_regions,
  waypoint_cells = NULL, waypoint_milestone_percentages = NULL)

Arguments

trajectory	The trajectory
waypoint_cells	A vector of waypoint cells. Only the geodesic distances between waypoint cells and all other cells will be calculated.
waypoint_milestone_percentages	The milestone percentages of non-cell waypoints, containing waypoint_id, milestone_id and percentage columns
cell_ids	The ids of the cells.
milestone_ids	The ids of the milestones in the trajectory. Type: Character vector.
milestone_network	The network of the milestones. Type: Data frame(from = character, to = character, length = numeric, directed = logical).
milestone_percentages	A data frame specifying what percentage milestone each cell consists of. Type: Data frame(cell_id = character, milestone_id = character, percentage = numeric).
divergence_regions	A data frame specifying the divergence regions between milestones (e.g. a bifurcation). Type: Data frame(divergence_id = character, milestone_id = character, is_start = logical).