Provide answers to various questions
answer_questions(dataset = NULL, multiple_disconnected = NULL, expect_topology = NULL, expected_topology = NULL, expect_cycles = NULL, expect_complex_tree = NULL, prior_information = NULL, n_cells = 1000, n_features = 1000, metric_importance = c(0.25, 0.25, 0.25, 0.25), dynmethods = TRUE, docker = dynwrap::test_docker_installation(), programming_interface = TRUE, languages = c("python", "C++", "R"), user_friendliness = 60, running_time = 5, n_methods = 4)
| dataset | The dataset from which the answers will be computed |
|---|---|
| multiple_disconnected | Do you expect multiple disconnected trajectories in the data? Defaults to NULL |
| expect_topology | Do you expect a particular topology in the data? Defaults to NULL |
| expected_topology | What is the expected topology Defaults to NULL |
| expect_cycles | Do you expect cycles in the data? Defaults to NULL |
| expect_complex_tree | Do you expect a complex tree in the data? Defaults to NULL |
| prior_information | Are you able to provide the following prior information? Defaults to NULL |
| n_cells | Number of cells Defaults to 1000 |
| n_features | Number of features (genes) Defaults to 1000 |
| metric_importance | How important are the following aspects of the trajectory? Defaults to c(0.25, 0.25, 0.25, 0.25) |
| dynmethods | Do you use dynmethods to run the methods? Defaults to TRUE |
| docker | Is docker installed? Defaults to dynwrap::test_docker_installation() |
| programming_interface | Can you work in a programming interface? Defaults to TRUE |
| languages | Which languages can you work with? Defaults to c("python", "C++", "R") |
| user_friendliness | Minimal user friendliness score Defaults to 60 |
| running_time | Maximal estimated running time (minutes) Defaults to 5 |
| n_methods | Number of methods Defaults to 4 |