Note that the given data wrapper requires a trajectory and expression values to have been added already.

add_prior_information(dataset, start_id = NULL, end_id = NULL,
  groups_id = NULL, groups_network = NULL, features_id = NULL,
  groups_n = NULL, start_n = NULL, end_n = NULL,
  timecourse_continuous = NULL, timecourse_discrete = NULL,
  verbose = TRUE)

Arguments

dataset

A data wrapper to extend upon.

start_id

The start cells

end_id

The end cells

groups_id

The grouping of cells, a dataframe with cell_id and group_id

groups_network

The network between groups, a dataframe with from and to

features_id

The features (genes) important for the trajectory

groups_n

Number of branches

start_n

Number of start states

end_n

Number of end states

timecourse_continuous

The time for every cell

timecourse_discrete

The time for every cell in groups

verbose

Whether or not to print informative messages or not