Add coloring
add_cell_coloring(cell_positions, color_cells = c("auto", "none", "grouping", "feature", "milestone", "pseudotime"), traj, grouping = NULL, groups = NULL, feature_oi = NULL, expression_source = "expression", pseudotime = NULL, color_milestones = c("auto", "given", "cubeHelix", "Set3", "rainbow"), milestones = NULL, milestone_percentages = NULL)
| cell_positions | The positions of the cells |
|---|---|
| color_cells | How to color the cells |
| traj | The trajectory |
| grouping | The grouping of the cells |
| groups | Tibble containing information of the cell groups |
| feature_oi | feature to plot expression |
| expression_source | Source of the feature expression, defaults to `expression` |
| pseudotime | The pseudotime |
| color_milestones | How to color the cells |
| milestones | Tibble containing the `milestone_id` and a `color` for each milestone |
| milestone_percentages | The milestone percentages |